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For the eight-week period ending July 22, 2008, and based on sales in hundreds of independent bookstores nationwide.
| 1. | Animal, Vegetable, Miracle |
| 2. | The Botany of Desire |
| 3. | The Wild Trees |
| 4. | The Garden Primer |
| 5. | American Earth: Environmental Writing Since Thoreau |
| 6. | Gardening at the Dragon's Gate: At Work in the Wild and Cultivated World |
| 7. | The Veggie Gardener's Answer Book |
| 8. | The Wild Places |
| 9. | Sunset Western Garden Book |
| 10. | National Audubon Society Field Guide to North American Trees: Eastern Region |
| 11. | Pilgrim at Tinker Creek |
| 12. | All New Square Foot Gardening: Grow More in Less Space! |
| 13. | Second Nature: A Gardener's Education |
| 14. | National Audubon Society Field Guide to North American Wildflowers: Eastern Region |
| 15. | The Best American Science and Nature Writing |
| 16. | The Complete Compost Gardening Guide |
| 17. | The Vegetable Gardener's Bible |
| 18. | National Wildlife Federation Field Guide to Trees of North America |
| 19. | Plants of the Pacific Northwest Coast |
| 20. | Grow Organic |
| 21. | Desert Solitaire |
| 22. | The Bill McKibben Reader: Pieces From an Active Life |
| 23. | Perennial Combinations |
| 24. | How to Grow More Vegetables |
| 25. | Walden: Or, Life in the Woods |